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Im not familiar with Eclipse CDT at all, but it seems as though other people using Eclipse have had similar questions.
Does Eclipse also provide compilation, linker and target info? Ie, is it just a text editor with syntax highlighting, or does it allow you to specify compiler and linker options?
If the latter, you ought to be able to specify linker flags to link the the Syphon.Framework and also have search path setups for compilation so it finds the headers.
I have no idea about Eclipse, but any fully fledge Mac compatible IDE should let you use arbitrary frameworks and link to them.
A quick google search brought up someone with similar questions:
With no answers. Any reason you are using Eclipse and *not* XCode?